IL_6VYT_172

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_172 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.069

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VYT|1|a|C|2652
6VYT|1|a|U|2653
6VYT|1|a|A|2654
6VYT|1|a|G|2655
6VYT|1|a|U|2656
6VYT|1|a|A|2657
6VYT|1|a|C|2658
*
6VYT|1|a|G|2663
6VYT|1|a|G|2664
6VYT|1|a|A|2665
6VYT|1|a|C|2666
6VYT|1|a|C|2667
6VYT|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain t

50S ribosomal protein L14