IL_6VYT_200

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYT_200 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYT|1|a|U|1851
6VYT|1|a|U|1852
6VYT|1|a|A|1853
6VYT|1|a|A|1854
6VYT|1|a|U|1855
6VYT|1|a|U|1856
6VYT|1|a|G|1857
6VYT|1|a|A|1858
6VYT|1|a|U|1859
6VYT|1|a|G|1860
*
6VYT|1|a|U|1882
6VYT|1|a|U|1883
6VYT|1|a|G|1884
6VYT|1|a|A|1885
6VYT|1|a|U|1886
6VYT|1|a|C|1887
6VYT|1|a|G|1888
6VYT|1|a|A|1889
6VYT|1|a|A|1890
6VYT|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA