IL_6VYU_021

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_021 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.1248

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6VYU|1|D|C|440
6VYU|1|D|A|441
6VYU|1|D|G|442
*
6VYU|1|D|C|492
6VYU|1|D|A|493
6VYU|1|D|G|494
6VYU|1|D|A|495
6VYU|1|D|A|496
6VYU|1|D|G|497

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4