IL_6VYU_025

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGCCAG*CGGUAAUAC

Length

15 nucleotides

Bulged bases

6VYU|1|D|A|532, 6VYU|1|D|U|534, 6VYU|1|D|A|535

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_025 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VYU|1|D|G|515
6VYU|1|D|G|517
6VYU|1|D|C|518
6VYU|1|D|C|519
6VYU|1|D|A|520
6VYU|1|D|G|521
*
6VYU|1|D|C|528
6VYU|1|D|G|529
6VYU|1|D|G|530
6VYU|1|D|U|531
6VYU|1|D|A|532
6VYU|1|D|A|533
6VYU|1|D|U|534
6VYU|1|D|A|535
6VYU|1|D|C|536

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12