IL_6VYU_038

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.068

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6VYU|1|D|G|887
6VYU|1|D|G|888
6VYU|1|D|A|889
6VYU|1|D|G|890
6VYU|1|D|U|891
6VYU|1|D|A|892
6VYU|1|D|C|893
6VYU|1|D|G|894
*
6VYU|1|D|U|905
6VYU|1|D|A|906
6VYU|1|D|A|907
6VYU|1|D|A|908
6VYU|1|D|A|909
6VYU|1|D|C|910

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12