IL_6VYU_041

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6VYU|1|D|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0982

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6VYU|1|D|G|933
6VYU|1|D|C|934
6VYU|1|D|A|935
*
6VYU|1|D|U|1380
6VYU|1|D|U|1381
6VYU|1|D|C|1382
6VYU|1|D|C|1383
6VYU|1|D|C|1384

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9