IL_6VYU_055
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6VYU|1|D|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VYU_055 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.0971
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VYU|1|D|U|1247
6VYU|1|D|A|1248
6VYU|1|D|C|1249
6VYU|1|D|A|1250
6VYU|1|D|A|1251
6VYU|1|D|A|1252
6VYU|1|D|G|1253
*
6VYU|1|D|C|1284
6VYU|1|D|A|1285
6VYU|1|D|U|1286
6VYU|1|D|A|1287
6VYU|1|D|A|1288
6VYU|1|D|A|1289
6VYU|1|D|G|1290
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
Coloring options: