IL_6VYU_082

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6VYU|1|a|G|801, 6VYU|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_082 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0597

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VYU|1|a|G|674
6VYU|1|a|A|675
6VYU|1|a|A|676
6VYU|1|a|A|677
6VYU|1|a|C|678
*
6VYU|1|a|G|799
6VYU|1|a|A|800
6VYU|1|a|G|801
6VYU|1|a|A|802
6VYU|1|a|U|803
6VYU|1|a|A|804
6VYU|1|a|G|805
6VYU|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15