IL_6VYU_085

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_085 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0916

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6VYU|1|a|U|703
6VYU|1|a|G|704
6VYU|1|a|A|705
6VYU|1|a|A|706
6VYU|1|a|G|707
*
6VYU|1|a|U|724
6VYU|1|a|G|725
6VYU|1|a|G|726
6VYU|1|a|A|727
6VYU|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2