IL_6VYU_090

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

6VYU|1|a|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_090 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.117

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6VYU|1|a|A|844
6VYU|1|a|A|845
6VYU|1|a|U|846
6VYU|1|a|U|847
*
6VYU|1|a|A|933
6VYU|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L30