IL_6VYU_095

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_095 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.0734

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6VYU|1|a|G|864
6VYU|1|a|C|865
6VYU|1|a|A|866
6VYU|1|a|C|867
6VYU|1|a|U|868
*
6VYU|1|a|A|909
6VYU|1|a|A|910
6VYU|1|a|A|911
6VYU|1|a|C|912

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

5S ribosomal RNA; 5S rRNA

Chain v

50S ribosomal protein L16