IL_6VYU_107

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6VYU|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_107 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.166

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6VYU|1|a|C|1043
6VYU|1|a|C|1044
6VYU|1|a|C|1045
6VYU|1|a|A|1046
6VYU|1|a|G|1047
6VYU|1|a|A|1048
6VYU|1|a|C|1049
6VYU|1|a|A|1050
6VYU|1|a|G|1051
*
6VYU|1|a|U|1108
6VYU|1|a|C|1109
6VYU|1|a|G|1110
6VYU|1|a|A|1111
6VYU|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36