IL_6VYU_126

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_126 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1659

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VYU|1|a|U|1474
6VYU|1|a|G|1475
6VYU|1|a|U|1476
6VYU|1|a|A|1477
6VYU|1|a|G|1478
*
6VYU|1|a|U|1513
6VYU|1|a|G|1514
6VYU|1|a|A|1515
6VYU|1|a|G|1516
6VYU|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains