3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CGAG*UGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VYU_129 not in the Motif Atlas
Homologous match to IL_5J7L_303
Geometric discrepancy: 0.1592
The information below is about IL_5J7L_303
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

6VYU|1|a|C|1526
6VYU|1|a|G|1527
6VYU|1|a|A|1528
6VYU|1|a|G|1529
*
6VYU|1|a|U|1542
6VYU|1|a|G|1543
6VYU|1|a|A|1544
6VYU|1|a|A|1545
6VYU|1|a|G|1546

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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