IL_6VYU_200

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYU_200 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYU|1|a|U|1851
6VYU|1|a|U|1852
6VYU|1|a|A|1853
6VYU|1|a|A|1854
6VYU|1|a|U|1855
6VYU|1|a|U|1856
6VYU|1|a|G|1857
6VYU|1|a|A|1858
6VYU|1|a|U|1859
6VYU|1|a|G|1860
*
6VYU|1|a|U|1882
6VYU|1|a|U|1883
6VYU|1|a|G|1884
6VYU|1|a|A|1885
6VYU|1|a|U|1886
6VYU|1|a|C|1887
6VYU|1|a|G|1888
6VYU|1|a|A|1889
6VYU|1|a|A|1890
6VYU|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA