IL_6VYW_199

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYW_199 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0458

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6VYW|1|a|G|1666
6VYW|1|a|G|1667
6VYW|1|a|A|1668
6VYW|1|a|A|1669
6VYW|1|a|C|1670
6VYW|1|a|U|1671
6VYW|1|a|A|1672
6VYW|1|a|G|1673
6VYW|1|a|G|1674
*
6VYW|1|a|C|1990
6VYW|1|a|U|1991
6VYW|1|a|G|1992
6VYW|1|a|U|1993
6VYW|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14