IL_6VYX_012

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6VYX|1|D|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1341

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6VYX|1|D|G|147
6VYX|1|D|G|148
6VYX|1|D|A|149
6VYX|1|D|U|150
6VYX|1|D|A|151
6VYX|1|D|A|152
6VYX|1|D|C|153
*
6VYX|1|D|G|168
6VYX|1|D|C|169
6VYX|1|D|U|170
6VYX|1|D|A|171
6VYX|1|D|A|172
6VYX|1|D|U|173
6VYX|1|D|A|174
6VYX|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20