IL_6VYX_014

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6VYX|1|D|U|244, 6VYX|1|D|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0755

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6VYX|1|D|G|242
6VYX|1|D|A|243
6VYX|1|D|U|244
6VYX|1|D|U|245
6VYX|1|D|A|246
6VYX|1|D|G|247
*
6VYX|1|D|C|277
6VYX|1|D|G|278
6VYX|1|D|A|279
6VYX|1|D|C|280
6VYX|1|D|G|281
6VYX|1|D|A|282
6VYX|1|D|U|283
6VYX|1|D|C|284

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain V

30S ribosomal protein S17