IL_6VYX_020

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2155

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VYX|1|D|U|409
6VYX|1|D|G|410
6VYX|1|D|A|411
6VYX|1|D|A|412
6VYX|1|D|G|413
6VYX|1|D|A|414
6VYX|1|D|A|415
6VYX|1|D|G|416
*
6VYX|1|D|U|427
6VYX|1|D|G|428
6VYX|1|D|U|429
6VYX|1|D|A|430
6VYX|1|D|A|431
6VYX|1|D|A|432
6VYX|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4