IL_6VYX_023

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_023 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6VYX|1|D|G|450
6VYX|1|D|A|451
6VYX|1|D|A|452
6VYX|1|D|G|453
6VYX|1|D|G|454
6VYX|1|D|G|455
*
6VYX|1|D|C|477
6VYX|1|D|A|478
6VYX|1|D|U|479
6VYX|1|D|U|480
6VYX|1|D|G|481
6VYX|1|D|A|482
6VYX|1|D|C|483

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16