IL_6VYX_025

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGCCAG*CGGUAAUAC

Length

15 nucleotides

Bulged bases

6VYX|1|D|A|532, 6VYX|1|D|U|534, 6VYX|1|D|A|535

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_025 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VYX|1|D|G|515
6VYX|1|D|G|517
6VYX|1|D|C|518
6VYX|1|D|C|519
6VYX|1|D|A|520
6VYX|1|D|G|521
*
6VYX|1|D|C|528
6VYX|1|D|G|529
6VYX|1|D|G|530
6VYX|1|D|U|531
6VYX|1|D|A|532
6VYX|1|D|A|533
6VYX|1|D|U|534
6VYX|1|D|A|535
6VYX|1|D|C|536

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12