IL_6VYX_199

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_199 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0457

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6VYX|1|a|G|1666
6VYX|1|a|G|1667
6VYX|1|a|A|1668
6VYX|1|a|A|1669
6VYX|1|a|C|1670
6VYX|1|a|U|1671
6VYX|1|a|A|1672
6VYX|1|a|G|1673
6VYX|1|a|G|1674
*
6VYX|1|a|C|1990
6VYX|1|a|U|1991
6VYX|1|a|G|1992
6VYX|1|a|U|1993
6VYX|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14