IL_6VYX_200

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYX_200 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYX|1|a|U|1851
6VYX|1|a|U|1852
6VYX|1|a|A|1853
6VYX|1|a|A|1854
6VYX|1|a|U|1855
6VYX|1|a|U|1856
6VYX|1|a|G|1857
6VYX|1|a|A|1858
6VYX|1|a|U|1859
6VYX|1|a|G|1860
*
6VYX|1|a|U|1882
6VYX|1|a|U|1883
6VYX|1|a|G|1884
6VYX|1|a|A|1885
6VYX|1|a|U|1886
6VYX|1|a|C|1887
6VYX|1|a|G|1888
6VYX|1|a|A|1889
6VYX|1|a|A|1890
6VYX|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA