IL_6VYY_012

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6VYY|1|D|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1341

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6VYY|1|D|G|147
6VYY|1|D|G|148
6VYY|1|D|A|149
6VYY|1|D|U|150
6VYY|1|D|A|151
6VYY|1|D|A|152
6VYY|1|D|C|153
*
6VYY|1|D|G|168
6VYY|1|D|C|169
6VYY|1|D|U|170
6VYY|1|D|A|171
6VYY|1|D|A|172
6VYY|1|D|U|173
6VYY|1|D|A|174
6VYY|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20