IL_6VYY_023

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6VYY|1|D|G|450
6VYY|1|D|A|451
6VYY|1|D|A|452
6VYY|1|D|G|453
6VYY|1|D|G|454
6VYY|1|D|G|455
*
6VYY|1|D|C|477
6VYY|1|D|A|478
6VYY|1|D|U|479
6VYY|1|D|U|480
6VYY|1|D|G|481
6VYY|1|D|A|482
6VYY|1|D|C|483

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16