IL_6VYY_048

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6VYY|1|D|C|1054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.08

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6VYY|1|D|U|1052
6VYY|1|D|G|1053
6VYY|1|D|C|1054
6VYY|1|D|A|1055
6VYY|1|D|U|1056
*
6VYY|1|D|A|1204
6VYY|1|D|U|1205
6VYY|1|D|G|1206

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14