IL_6VYY_073

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_073 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0508

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6VYY|1|a|C|239
6VYY|1|a|C|240
6VYY|1|a|A|241
6VYY|1|a|G|242
6VYY|1|a|U|243
6VYY|1|a|A|244
6VYY|1|a|G|245
*
6VYY|1|a|C|253
6VYY|1|a|G|254
6VYY|1|a|A|255
6VYY|1|a|A|256
6VYY|1|a|C|257
6VYY|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L35

Chain u

50S ribosomal protein L15