IL_6VYY_082

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6VYY|1|a|G|801, 6VYY|1|a|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_082 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0597

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VYY|1|a|G|674
6VYY|1|a|A|675
6VYY|1|a|A|676
6VYY|1|a|A|677
6VYY|1|a|C|678
*
6VYY|1|a|G|799
6VYY|1|a|A|800
6VYY|1|a|G|801
6VYY|1|a|A|802
6VYY|1|a|U|803
6VYY|1|a|A|804
6VYY|1|a|G|805
6VYY|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15