IL_6VYY_122

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6VYY|1|a|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_122 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.0934

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6VYY|1|a|G|1432
6VYY|1|a|A|1433
6VYY|1|a|A|1434
6VYY|1|a|G|1435
*
6VYY|1|a|C|1557
6VYY|1|a|C|1558
6VYY|1|a|U|1559
6VYY|1|a|G|1560
6VYY|1|a|C|1561

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2