IL_6VYY_126

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_126 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1659

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VYY|1|a|U|1474
6VYY|1|a|G|1475
6VYY|1|a|U|1476
6VYY|1|a|A|1477
6VYY|1|a|G|1478
*
6VYY|1|a|U|1513
6VYY|1|a|G|1514
6VYY|1|a|A|1515
6VYY|1|a|G|1516
6VYY|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains