IL_6VYY_172

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_172 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.069

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VYY|1|a|C|2652
6VYY|1|a|U|2653
6VYY|1|a|A|2654
6VYY|1|a|G|2655
6VYY|1|a|U|2656
6VYY|1|a|A|2657
6VYY|1|a|C|2658
*
6VYY|1|a|G|2663
6VYY|1|a|G|2664
6VYY|1|a|A|2665
6VYY|1|a|C|2666
6VYY|1|a|C|2667
6VYY|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain t

50S ribosomal protein L14