IL_6VYY_176

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_176 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0661

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VYY|1|a|G|2737
6VYY|1|a|A|2738
6VYY|1|a|U|2739
6VYY|1|a|A|2740
6VYY|1|a|A|2741
6VYY|1|a|G|2742
*
6VYY|1|a|C|2762
6VYY|1|a|G|2763
6VYY|1|a|A|2764
6VYY|1|a|A|2765
6VYY|1|a|A|2766
6VYY|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13