IL_6VYY_200

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYY_200 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYY|1|a|U|1851
6VYY|1|a|U|1852
6VYY|1|a|A|1853
6VYY|1|a|A|1854
6VYY|1|a|U|1855
6VYY|1|a|U|1856
6VYY|1|a|G|1857
6VYY|1|a|A|1858
6VYY|1|a|U|1859
6VYY|1|a|G|1860
*
6VYY|1|a|U|1882
6VYY|1|a|U|1883
6VYY|1|a|G|1884
6VYY|1|a|A|1885
6VYY|1|a|U|1886
6VYY|1|a|C|1887
6VYY|1|a|G|1888
6VYY|1|a|A|1889
6VYY|1|a|A|1890
6VYY|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA