IL_6VYZ_200

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VYZ_200 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6VYZ|1|a|U|1851
6VYZ|1|a|U|1852
6VYZ|1|a|A|1853
6VYZ|1|a|A|1854
6VYZ|1|a|U|1855
6VYZ|1|a|U|1856
6VYZ|1|a|G|1857
6VYZ|1|a|A|1858
6VYZ|1|a|U|1859
6VYZ|1|a|G|1860
*
6VYZ|1|a|U|1882
6VYZ|1|a|U|1883
6VYZ|1|a|G|1884
6VYZ|1|a|A|1885
6VYZ|1|a|U|1886
6VYZ|1|a|C|1887
6VYZ|1|a|G|1888
6VYZ|1|a|A|1889
6VYZ|1|a|A|1890
6VYZ|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA