IL_6VZ2_035

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6VZ2|1|D|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ2_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6VZ2|1|D|U|684
6VZ2|1|D|G|685
6VZ2|1|D|U|686
6VZ2|1|D|A|687
6VZ2|1|D|G|688
*
6VZ2|1|D|C|699
6VZ2|1|D|G|700
6VZ2|1|D|U|701
6VZ2|1|D|A|702
6VZ2|1|D|G|703
6VZ2|1|D|A|704
6VZ2|1|D|G|705
6VZ2|1|D|A|706

Current chains

Chain D

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S11

Chain a

Large subunit ribosomal RNA; LSU rRNA