IL_6VZ3_012

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6VZ3|1|D|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ3_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1341

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6VZ3|1|D|G|147
6VZ3|1|D|G|148
6VZ3|1|D|A|149
6VZ3|1|D|U|150
6VZ3|1|D|A|151
6VZ3|1|D|A|152
6VZ3|1|D|C|153
*
6VZ3|1|D|G|168
6VZ3|1|D|C|169
6VZ3|1|D|U|170
6VZ3|1|D|A|171
6VZ3|1|D|A|172
6VZ3|1|D|U|173
6VZ3|1|D|A|174
6VZ3|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20