IL_6VZ3_020
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VZ3_020 not in the Motif Atlas
- Geometric match to IL_6CZR_359
- Geometric discrepancy: 0.2155
- The information below is about IL_6CZR_359
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.2
- Basepair signature
- cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6VZ3|1|D|U|409
6VZ3|1|D|G|410
6VZ3|1|D|A|411
6VZ3|1|D|A|412
6VZ3|1|D|G|413
6VZ3|1|D|A|414
6VZ3|1|D|A|415
6VZ3|1|D|G|416
*
6VZ3|1|D|U|427
6VZ3|1|D|G|428
6VZ3|1|D|U|429
6VZ3|1|D|A|430
6VZ3|1|D|A|431
6VZ3|1|D|A|432
6VZ3|1|D|G|433
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S4
Coloring options: