IL_6VZ3_025

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCCAG*CGGUAAUAC

Length

15 nucleotides

Bulged bases

6VZ3|1|D|A|532, 6VZ3|1|D|U|534, 6VZ3|1|D|A|535

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ3_025 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6VZ3|1|D|G|515
6VZ3|1|D|G|517
6VZ3|1|D|C|518
6VZ3|1|D|C|519
6VZ3|1|D|A|520
6VZ3|1|D|G|521
*
6VZ3|1|D|C|528
6VZ3|1|D|G|529
6VZ3|1|D|G|530
6VZ3|1|D|U|531
6VZ3|1|D|A|532
6VZ3|1|D|A|533
6VZ3|1|D|U|534
6VZ3|1|D|A|535
6VZ3|1|D|C|536

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12