IL_6VZ3_060

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ3_060 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.1077

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VZ3|1|D|G|1401
6VZ3|1|D|C|1403
6VZ3|1|D|C|1404
*
6VZ3|1|D|G|1497
6VZ3|1|D|A|1499
6VZ3|1|D|A|1500
6VZ3|1|D|C|1501

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA