IL_6VZ5_020

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2155

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VZ5|1|D|U|409
6VZ5|1|D|G|410
6VZ5|1|D|A|411
6VZ5|1|D|A|412
6VZ5|1|D|G|413
6VZ5|1|D|A|414
6VZ5|1|D|A|415
6VZ5|1|D|G|416
*
6VZ5|1|D|U|427
6VZ5|1|D|G|428
6VZ5|1|D|U|429
6VZ5|1|D|A|430
6VZ5|1|D|A|431
6VZ5|1|D|A|432
6VZ5|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4