IL_6VZ5_025

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCCAG*CGGUAAUAC

Length

15 nucleotides

Bulged bases

6VZ5|1|D|A|532, 6VZ5|1|D|U|534, 6VZ5|1|D|A|535

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_025 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6VZ5|1|D|G|515
6VZ5|1|D|G|517
6VZ5|1|D|C|518
6VZ5|1|D|C|519
6VZ5|1|D|A|520
6VZ5|1|D|G|521
*
6VZ5|1|D|C|528
6VZ5|1|D|G|529
6VZ5|1|D|G|530
6VZ5|1|D|U|531
6VZ5|1|D|A|532
6VZ5|1|D|A|533
6VZ5|1|D|U|534
6VZ5|1|D|A|535
6VZ5|1|D|C|536

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12