IL_6VZ5_038

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0681

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6VZ5|1|D|G|887
6VZ5|1|D|G|888
6VZ5|1|D|A|889
6VZ5|1|D|G|890
6VZ5|1|D|U|891
6VZ5|1|D|A|892
6VZ5|1|D|C|893
6VZ5|1|D|G|894
*
6VZ5|1|D|U|905
6VZ5|1|D|A|906
6VZ5|1|D|A|907
6VZ5|1|D|A|908
6VZ5|1|D|A|909
6VZ5|1|D|C|910

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12