IL_6VZ5_107

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6VZ5|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_107 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1661

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6VZ5|1|a|C|1043
6VZ5|1|a|C|1044
6VZ5|1|a|C|1045
6VZ5|1|a|A|1046
6VZ5|1|a|G|1047
6VZ5|1|a|A|1048
6VZ5|1|a|C|1049
6VZ5|1|a|A|1050
6VZ5|1|a|G|1051
*
6VZ5|1|a|U|1108
6VZ5|1|a|C|1109
6VZ5|1|a|G|1110
6VZ5|1|a|A|1111
6VZ5|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36