IL_6VZ7_012

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6VZ7|1|D|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.134

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6VZ7|1|D|G|147
6VZ7|1|D|G|148
6VZ7|1|D|A|149
6VZ7|1|D|U|150
6VZ7|1|D|A|151
6VZ7|1|D|A|152
6VZ7|1|D|C|153
*
6VZ7|1|D|G|168
6VZ7|1|D|C|169
6VZ7|1|D|U|170
6VZ7|1|D|A|171
6VZ7|1|D|A|172
6VZ7|1|D|U|173
6VZ7|1|D|A|174
6VZ7|1|D|C|175

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20