IL_6VZ7_020

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2156

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VZ7|1|D|U|409
6VZ7|1|D|G|410
6VZ7|1|D|A|411
6VZ7|1|D|A|412
6VZ7|1|D|G|413
6VZ7|1|D|A|414
6VZ7|1|D|A|415
6VZ7|1|D|G|416
*
6VZ7|1|D|U|427
6VZ7|1|D|G|428
6VZ7|1|D|U|429
6VZ7|1|D|A|430
6VZ7|1|D|A|431
6VZ7|1|D|A|432
6VZ7|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4