3D structure

PDB id
6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VZ7_023 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.1396
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6VZ7|1|D|G|450
6VZ7|1|D|A|451
6VZ7|1|D|A|452
6VZ7|1|D|G|453
6VZ7|1|D|G|454
6VZ7|1|D|G|455
*
6VZ7|1|D|C|477
6VZ7|1|D|A|478
6VZ7|1|D|U|479
6VZ7|1|D|U|480
6VZ7|1|D|G|481
6VZ7|1|D|A|482
6VZ7|1|D|C|483

Current chains

Chain D
16S rRNA

Nearby chains

Chain U
30S ribosomal protein S16

Coloring options:


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