IL_6VZ7_085

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_085 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0916

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6VZ7|1|a|U|703
6VZ7|1|a|G|704
6VZ7|1|a|A|705
6VZ7|1|a|A|706
6VZ7|1|a|G|707
*
6VZ7|1|a|U|724
6VZ7|1|a|G|725
6VZ7|1|a|G|726
6VZ7|1|a|A|727
6VZ7|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2