IL_6VZ7_125

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

6VZ7|1|a|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_125 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.0782

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VZ7|1|a|U|1468
6VZ7|1|a|A|1469
6VZ7|1|a|A|1470
6VZ7|1|a|G|1471
*
6VZ7|1|a|U|1520
6VZ7|1|a|G|1521
6VZ7|1|a|A|1522
6VZ7|1|a|U|1523
6VZ7|1|a|G|1524

Current chains

Chain a

23S rRNA

Nearby chains