IL_6VZJ_171

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6VZJ|1|a|G|2780

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZJ_171 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0681

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6VZJ|1|a|C|2636
6VZJ|1|a|U|2637
6VZJ|1|a|G|2638
6VZJ|1|a|A|2639
6VZJ|1|a|G|2640
*
6VZJ|1|a|C|2774
6VZJ|1|a|G|2775
6VZJ|1|a|A|2776
6VZJ|1|a|G|2777
6VZJ|1|a|A|2778
6VZJ|1|a|U|2779
6VZJ|1|a|G|2780
6VZJ|1|a|A|2781
6VZJ|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain s

50S ribosomal protein L13