IL_6W2S_019

3D structure

PDB id

6W2S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

6W2S|1|A|G|113, 6W2S|1|A|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2S_019 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1465

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6W2S|1|A|U|112
6W2S|1|A|G|113
6W2S|1|A|G|114
6W2S|1|A|U|115
*
6W2S|1|A|A|348
6W2S|1|A|A|349

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8

Chain M

uS17